Marine bacterial inhibitors from the sponge-derived fungus Aspergillus sp.

Chromatographic separation of a crude extract obtained from the fungus Aspergillus sp., isolated from the Mediterranean sponge Tethya aurantium, yielded a new tryptophan derived alkaloid, 3-((1-hydroxy-3-(2-methylbut-3-en-2-yl)-2-oxoindolin-3-yl)methyl)-1-methyl-3,4-dihydrobenzo[e][1,4]diazepine-2,5-dione (1), and a new meroterpenoid, austalide R (2), together with three known compounds (3–5). The structures of the new compounds were unambiguously elucidated on the basis of extensive one and two-dimensional NMR (¹H, ¹³C, COSY, HMBC, and ROESY) and mass spectral analysis. Interestingly, the compounds exhibited antibacterial activity when tested against a panel of marine bacteria, with 1 selectively inhibiting Vibrio species and 2 showing a broad spectrum of activity. In contrast, no significant activity was observed against terrestrial bacterial strains and the murine cancer cell line L5178Y.     

Structural revision and absolute configuration of lateritin

‘Lateritin’ (1), a morpholine-2,5-dione (depsipeptide), was reinvestigated for its structure and absolute configuration. On the basis of thorough 1D and 2D NMR and mass spectrometrical analyses, the structure of 1 was revised to be identical with beauvericin (8) and confirmed that beauvericin (8) is the trimeric lactone of ‘lateritin’ (1). The absolute configuration was determined by acidic hydrolysis, followed by application of Marfey’s method, menthyl ester derivatization, and GC–MS analysis. In addition, the specific optical rotation values of the hydrolysis products were compared with those of available standards.     

Femtosecond fluorescence and intersystem crossing in rhenium(I) carbonyl-bipyridine complexes

Ultrafast electronic-vibrational relaxation upon excitation of the singlet charge-transfer b (1)A' state of [Re(L)(CO) 3(bpy)] ( n ) (L = Cl, Br, I, n = 0; L = 4-Et-pyridine, n = 1+) in acetonitrile was investigated using the femtosecond fluorescence up-conversion technique with polychromatic detection. In addition, energies, characters, and molecular structures of the emitting states were calculated by TD-DFT. The luminescence is characterized by a broad fluorescence band at very short times, and evolves to the steady-state phosphorescence spectrum from the a (3)A" state at longer times. The analysis of the data allows us to identify three spectral components. The first two are characterized by decay times tau 1 = 85-150 fs and tau 2 = 340-1200 fs, depending on L, and are identified as fluorescence from the initially excited singlet state and phosphorescence from a higher triplet state (b (3)A"), respectively. The third component corresponds to the long-lived phosphorescence from the lowest a (3)A" state. In addition, it is found that the fluorescence decay time (tau 1) corresponds to the intersystem crossing (ISC) time to the two emissive triplet states. tau 2 corresponds to internal conversion among triplet states. DFT results show that ISC involves electron exchange in orthogonal, largely Re-localized, molecular orbitals, whereby the total electron momentum is conserved. Surprisingly, the measured ISC rates scale inversely with the spin-orbit coupling constant of the ligand L, but we find a clear correlation between the ISC times and the vibrational periods of the Re-L mode, suggesting that the latter may mediate the ISC in a strongly nonadiabatic regime.     

An alternative approach: a highly selective dual responding fluoride sensor having active methylene group as binding site

A newly designed phosphonium derivative (L) having active methylene functionality, shows unusual preference towards F(-) over all other anions. The binding process through C-H···F(-) hydrogen bond formation was probed by monitoring the changes in either electronic or luminescence spectra. Changes in both cases are significant enough to allow visual detection. The loss of molecular flexibility of L on forming L·F(-) effectively interrupts the non-radiative deactivation pathway and accounts for the observed switch on fluorescence response. The results of the time-resolved emission studies for L and L·F(-) using a time-correlated single photon counting technique further corroborate this presumption. The excellent preference of L towards F(-) is attributed to an efficient hydrogen bonding interaction between the strongly polarized methylene protons and F(-), which delineates the subtle difference in the affinity among other competing anionic analytes like CN(-), H(2)PO(4)(-), CH(3)CO(2)(-), etc. The relative affinities of various anions and the preferential binding of F(-) to reagent L are also rationalized using computational studies.     

Restricted Conformational Flexibility of a Triphenylamine Derivative on the Formation of Host–Guest Complexes with Various Macrocyclic Hosts

Herein, we report the host–guest‐type complex formation between the host molecules cucurbit[7]uril (CB[7]), β‐cyclodextrin (β‐CD), and dibenzo[24]crown‐8 ether (DB24C8) and a newly synthesized triphenylamine (TPA) derivative 1 X₃ as the guest component. The host–guest complex formation was studied in detail by using ¹H NMR, 2D NOESY, UV/Vis fluorescence, and time‐resolved emission spectroscopy. The chloride salt of the TPA derivative was used for recognition studies with CB[7] and β‐CD in an aqueous medium. The restricted internal rotation of the guest molecule on complex formation with either of these two host molecules was reflected in the enhancement of the emission quantum yield and the average excited‐state lifetime for the triphenylamine‐based excited states. Studies with DB24C8 as the host molecule were performed in dichloromethane, a medium that maximizes the noncovalent interaction between the host and guest fragments. The Förster resonance energy transfer (FRET) process involving DB24C8 and 1 (PF₆)₃, as the donor and acceptor fragments, respectively, was established by electrochemical, steady‐state emission, and time‐correlated single‐photon counting studies.     

A Taco Complex Derived from a Bis-Crown Ether Capable of Executing Molecular Logic Operation through Reversible Complexation

As learned from natural systems, self-assembly and self-sorting help in interconnecting different molecular logic gates and thus achieve high-level logic functions. In this context, demonstration of important logic operations using changes in optical responses due to the formation of molecular assemblies is even more desirable for the construction of a molecular computer. Synthesis of an appropriate divalent as well as a luminescent crown ether based host 1 and paraquat derivatives, 2(PF(6))(2) and 3(PF(6))(2), as guests helped in demonstrating a reversible [3](taco complex) (1·{2(PF(6))(2)}(2) or 1·{3(PF(6))(2)}(2)) formation in nonpolar solvent. Detailed (1)H NMR studies revealed that two paraquat units were bound cooperatively by the two crown units in 1. Because of preorganization, the flexible host molecule 1 adopts a folded conformation, where each of two paraquat units remain sandwiched between the two aromatic units of each folded crown ether moiety in 1. Disassembly of the "taco" complex in the presence of KPF(6) and reassembly on subsequent addition of DB18C6 was initially demonstrated by (1)H NMR spectral studies, which were subsequently corroborated through luminescence spectral studies. Further, luminescence spectral responses as output signals with appropriate and two independent molecular inputs could be correlated to demonstrate basic logic operation like OR and YES gates, while the results of the three molecular inputs could be utilized to demonstrate important logic operation like an INHIBIT gate.     

Effects of Pithecellobium jiringa ethanol extract against ethanol-induced gastric mucosal injuries in Sprague-Dawley rats

Current anti-gastric ulcer agents have side effects, despite the progression and expansion of advances in treatment. This study aimed to investigate the gastroprotective mechanisms of Pithecellobium jiringa ethanol extract against ethanol-induced gastric mucosal ulcers in rats. For this purpose, Sprague Dawley rats were randomly divided into five groups: Group 1 (normal control) rats were orally administered with vehicle (carboxymethyl cellulose), Group 2 (ulcer control) rats were also orally administered with vehicle. Group 3 (positive control) rats were orally administered with 20 mg/kg omeprazole, Groups 4 and 5 (experimental groups) received ethanol extract of Pithecellobium jiringa ethanol extract at a concentration of 250 and 500 mg/kg, respectively. Sixty minutes later, vehicle was given orally to the normal control group, and absolute ethanol was given orally to the ulcer control, positive control and experimental groups to generate gastric mucosal injury. The rats were sacrificed an hour later. The effect of oral administration of plant extract on ethanol-induced gastric mucosal injury was studied grossly and histology. The level of lipid peroxidation (malondialdehyde-MDA), superoxide dismutase (SOD) and gastric wall mucus were measured from gastric mucosal homogenate. The ulcer control group exhibited severe gastric mucosal injury, and this finding was also confirmed by histology of gastric mucosa which showed severe damage to the gastric mucosa with edema and leucocyte infiltration of the submucosal layer. Pre-treatment with plant extract significantly reduced the formation of ethanol-induced gastric lesions, and gastric wall mucus was significantly preserved. The study also indicated a significant increase in SOD activity in gastric mucosal homogenate, whereas a significant decrease in MDA was observed. Acute toxicity tests did not show any signs of toxicity and mortality up to 5 g/kg. The ulcer protective effect of this plant may possibly be due to its preservation of gastric wall mucus along with increased SOD activity and reduction of oxidative stress (MDA). The extract is non-toxic, even at relatively high concentrations.     

Hybrid graphene and graphitic carbon nitride nanocomposite: gap opening, electron-hole puddle, interfacial charge transfer, and enhanced visible light response

Opening up a band gap and finding a suitable substrate material are two big challenges for building graphene-based nanodevices. Using state-of-the-art hybrid density functional theory incorporating long-range dispersion corrections, we investigate the interface between optically active graphitic carbon nitride (g-C(3)N(4)) and electronically active graphene. We find an inhomogeneous planar substrate (g-C(3)N(4)) promotes electron-rich and hole-rich regions, i.e., forming a well-defined electron-hole puddle, on the supported graphene layer. The composite displays significant charge transfer from graphene to the g-C(3)N(4) substrate, which alters the electronic properties of both components. In particular, the strong electronic coupling at the graphene/g-C(3)N(4) interface opens a 70 meV gap in g-C(3)N(4)-supported graphene, a feature that can potentially allow overcoming the graphene's band gap hurdle in constructing field effect transistors. Additionally, the 2-D planar structure of g-C(3)N(4) is free of dangling bonds, providing an ideal substrate for graphene to sit on. Furthermore, when compared to a pure g-C(3)N(4) monolayer, the hybrid graphene/g-C(3)N(4) complex displays an enhanced optical absorption in the visible region, a promising feature for novel photovoltaic and photocatalytic applications.     

Monolithically integrated dye-doped PDMS long-pass filters for disposable on-chip fluorescence detection

We report the fabrication of high quality monolithically integrated optical long-pass filters, for use in disposable diagnostic microchips. The filters were prepared by incorporating dye molecules directly into the microfluidic chip substrate, thereby providing a fully integrated solution that removes the usual need for discrete optical filters. In brief, lysochrome dyes were added to a poly(dimethylsiloxane) (PDMS) monomer prior to moulding of the microchip from a structured SU-8 master. Optimum results were obtained using 1 mm layers of PDMS doped with 1200 microg mL(-1) Sudan II, which resulted in less than 0.01% transmittance below 500 nm (OD 4), >80% above 570 nm, and negligible autofluorescence. These spectral characteristics compare favourably with commercially available Schott-glass long-pass filters, indicating that high quality optical filters can be straightforwardly integrated into the form of PDMS microfluidic chips. The filters were found to be robust in use, showing only slight degradation after extended illumination and negligible dye leaching after prolonged exposure to aqueous solutions. The provision of low cost high quality integrated filters represents a key step towards the development of high-sensitivity disposable microfluidic devices for point-of-care diagnostics.     

Combining Constraint Programming and Linear Programming on an Example of Bus Driver Scheduling

This paper provides details of a successful application where the Column Generation algorithm was used to combine Constraint Programming and Linear Programming. In the past, constraint programming and linear programming were considered to be two competing technologies that solved similar types of problems. Both these technologies had their strengths and weaknesses. This paper shows that the two technologies can be combined together to extract the strengths of both these technologies. Details of a real-world application to optimize bus driver duties is given here. This system was developed by ILOG for a major software house in Japan using ILOG-Solver and ILOG-CPLEX, constraint programming and linear programming C/C++ libraries.